Miyakogusa Predicted Gene

Lj0g3v0299869.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M5W4_SOYBN 1129 93.1 95.8 (tr|I1M5W4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G15750.4 1042 85.8 91.7 | Symbols: WSIP1, TPL | Transducin family protein / WD-40 repeat family protein | chr1:5415086-5420359 REVERSE LENGTH=1131
Medicago Medtr4g009840.1 1103 91.2 94.1 | topless-like protein | HC | chr4:2077221-2085811 | 20130731
Soybean Glyma13g44420.2 1127 93.1 95.8  
LJGI gnl|LJGI|TC77986 515 88.1 88.1 homologue to UniRef100_A7QQ63 Cluster: Chromosome undetermined scaffold_141, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_141, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0299869.3 length: 576 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00028 458-493
498-536
HMMSmart SM00320 WD40 0.051 346-385
406-446
452-493
496-537
ProfileScan PS50082 WD_REPEATS_2 11.010 459-502
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 3.1e-05 4-36
ProfileScan PS50896 LISH 10.297 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.1e-13 34-92
ProfileScan PS50897 CTLH 13.366 34-92
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5e-30 340-572
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.584 414-576
superfamily SSF50978 WD40 7.3e-28 356-575
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 480-494
no_ID  
HMMPanther PTHR22847 WD40 2.4e-147 95-573
HMMPanther PTHR22847:SF106SUBFAMILY NOT 2.4e-147 95-573
Wolf-PSORT
Lj0g3v0299869.3	nucl 7, chlo 4, cyto_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0299869.3