Miyakogusa Predicted Gene

Lj0g3v0299499.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KSZ6_SOYBN 110 61.9 72.2 (tr|I1KSZ6) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT1G23850.1 55.5 40.9 63.6 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8425981-8427045 REVERSE LENGTH=354

Medicago Medtr1g060280.1 119 71.1 80.7 | transmembrane protein | LC | chr1:26234650-26235657 | 20130731

Soybean Glyma08g14270.1 110 61.9 72.2

LJGI gnl|LJGI|TC59708 355 95.1 95.1 similar to UniRef100_A7PMD0 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

Putative transmembrane regions

From To

TM segments
SOSUI 1 23

54 76

84 106

115 136

Wolf-PSORT

Lj0g3v0299499.1 extr 5, plas 4, golg 3, vacu 2, nucl_plas 2, cysk_plas 2, E.R._plas 2, mito_plas 2, cyto_plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0299499.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KSZ6_SOYBN	110	61.9	72.2	(tr\|I1KSZ6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT1G23850.1	55.5	40.9	63.6	\| Symbols: \| unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:8425981-8427045 REVERSE LENGTH=354
Medicago	Medtr1g060280.1	119	71.1	80.7	\| transmembrane protein \| LC \| chr1:26234650-26235657 \| 20130731
Soybean	Glyma08g14270.1	110	61.9	72.2
LJGI	gnl\|LJGI\|TC59708	355	95.1	95.1	similar to UniRef100_A7PMD0 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)