Miyakogusa Predicted Gene
- Lj0g3v0297779.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LNG4_SOYBN |
700 |
84.0 |
88.5 |
(tr|I1LNG4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G67850.2 |
585 |
76.2 |
85.6 |
| Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404 |
| Medicago |
Medtr3g086610.4 |
693 |
83.2 |
88.5 |
| lysine ketoglutarate reductase trans-splicing protein | HC | chr3:39259919-39264384 | 20130731 |
| Soybean |
Glyma11g37770.1 |
700 |
84.0 |
88.5 |
|
| LJGI |
gnl|LJGI|TC62544 |
1183 |
100.0 |
100.0 |
similar to UniRef100_A7P4A9 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0297779.1 |
length: 398 aa. |
| IPR007877 |
Protein of unknown function DUF707 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF05212 |
DUF707 |
7.1e-163 |
92-383 |
| no_ID |
|
| HMMPanther |
PTHR31210 |
FAMILY |
1.1e-231 |
1-398 |
| HMMPanther |
PTHR31210:SF0 |
SUBFAMILY |
1.1e-231 |
1-398 |
| Seg |
seg |
seg |
NA |
20-35 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
17 |
39 |
- Wolf-PSORT
Lj0g3v0297779.1 chlo 3, cyto 3, mito 3, chlo_mito 3, nucl 1, plas 1, extr 1, vacu 1, golg 1, nucl_plas 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0297779.1 |
|