Miyakogusa Predicted Gene
- Lj0g3v0296399.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TJW2_SOYBN |
520 |
76.3 |
85.3 |
(tr|C6TJW2) Putative uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT3G55740.1 |
481 |
70.6 |
81.2 |
| Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20695786-20698157 FORWARD LENGTH=439 |
| Medicago |
Medtr3g069960.1 |
497 |
71.8 |
83.6 |
| transmembrane amino acid transporter family protein | HC | chr3:31319235-31322788 | 20130731 |
| Soybean |
Glyma18g03530.1 |
515 |
75.4 |
84.7 |
|
| LJGI |
gnl|LJGI|DC597100 |
1114 |
99.8 |
99.8 |
similar to UniRef100_P92961 Cluster: Proline transporter 1; n=1; Arabidopsis thaliana|Rep: Proline transporter 1 - Arabidopsis thaliana (Mouse-ear cress), partial (38%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0296399.1 |
length: 330 aa. |
| IPR013057 |
Amino acid transporter, transmembrane |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01490 |
Aa_trans |
1.7e-56 |
32-329 |
| no_ID |
|
| HMMPanther |
PTHR22950 |
AMINO |
2.9e-45 |
20-329 |
| Seg |
seg |
seg |
NA |
59-72 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
60 |
82 |
| 120 |
142 |
| 150 |
172 |
| 179 |
201 |
| 219 |
241 |
| 256 |
277 |
| 299 |
321 |
- Wolf-PSORT
Lj0g3v0296399.1 plas 6, cyto 2, mito 2, vacu 2, pero 2, cyto_pero 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0296399.1 |
|