Miyakogusa Predicted Gene
- Lj0g3v0294299.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LA03_SOYBN |
167 |
71.3 |
83.5 |
(tr|I1LA03) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G56160.1 |
112 |
51.7 |
69.8 |
| Symbols: | Sodium Bile acid symporter family | chr3:20837733-20841541 REVERSE LENGTH=436 |
| Medicago |
Medtr1g050462.1 |
154 |
73.0 |
78.3 |
| Na+-bile acid cotransporter | HC | chr1:19438571-19428186 | 20130731 |
| Soybean |
Glyma10g14310.1 |
167 |
71.3 |
83.5 |
|
| LJGI |
gnl|LJGI|TC77005 |
525 |
100.0 |
100.0 |
similar to UniRef100_A7QLK0 Cluster: Chromosome undetermined scaffold_119, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_119, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0294299.2 |
length: 115 aa. |
| IPR016833 |
Putative sodium bile acid cotransporter |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR18640 |
FAMILY |
1.6e-34 |
1-114 |
| HMMPfam |
PF13593 |
DUF4137 |
5.2e-14 |
2-104 |
| no_ID |
|
| HMMPanther |
PTHR18640:SF1 |
GB |
1.6e-34 |
1-114 |
| Seg |
seg |
seg |
NA |
12-22 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
11 |
33 |
| 81 |
103 |
- Wolf-PSORT
Lj0g3v0294299.2 chlo 5.5, chlo_mito 4.5, mito 2.5, plas 2, extr 1, E.R. 1, pero 1, golg 1, nucl_plas 1, cysk_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0294299.2 |
|