Miyakogusa Predicted Gene

Lj0g3v0294029.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JUH3_SOYBN 691 85.3 89.4 (tr|I1JUH3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G32551.1 578 70.8 81.0 | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931
Medicago Medtr3g107910.1 677 83.2 88.1 | transcriptional corepressor leunig-like protein | HC | chr3:49795618-49803676 | 20130731
Soybean Glyma04g07460.1 664 82.9 87.1  
LJGI gnl|LJGI|TC58302 1072 92.7 92.7 similar to UniRef100_A7P5M4 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0294029.3 length: 389 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 8.3e-09 144-174
180-217
224-261
306-341
HMMSmart SM00320 WD40 0.86 136-175
178-217
221-261
303-341
347-386
ProfileScan PS50082 WD_REPEATS_2 10.542 143-184
185-220
228-270
310-342
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.9e-59 130-387
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 36.015 143-389
superfamily SSF50978 WD40 1.7e-54 102-387
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 204-218
no_ID  
HMMPanther PTHR22847 WD40 1.7e-91 12-389
HMMPanther PTHR22847:SF131PUTATIVE UNCHARACTERIZED 1.7e-91 12-389
Seg seg seg NA 24-48
Wolf-PSORT
Lj0g3v0294029.3	nucl 8, mito 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0294029.3