Miyakogusa Predicted Gene

Lj0g3v0294029.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JUH3_SOYBN 664 82.9 87.1 (tr|I1JUH3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G32551.1 587 72.5 82.9 | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931
Medicago Medtr3g107910.1 652 81.1 85.8 | transcriptional corepressor leunig-like protein | HC | chr3:49795618-49803676 | 20130731
Soybean Glyma04g07460.1 672 84.9 89.2  
LJGI gnl|LJGI|TC58302 1072 92.7 92.7 similar to UniRef100_A7P5M4 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0294029.1 length: 380 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 8e-09 135-165
171-208
215-252
297-332
HMMSmart SM00320 WD40 0.86 127-166
169-208
212-252
294-332
338-377
ProfileScan PS50082 WD_REPEATS_2 10.542 134-175
176-211
219-261
301-333
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.1e-59 121-378
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 36.015 134-380
superfamily SSF50978 WD40 1.7e-54 93-378
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 195-209
no_ID  
HMMPanther PTHR22847 WD40 4.6e-90 12-380
HMMPanther PTHR22847:SF131PUTATIVE UNCHARACTERIZED 4.6e-90 12-380
Seg seg seg NA 24-48
Wolf-PSORT
Lj0g3v0294029.1	nucl 7, mito 4, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0294029.1