Miyakogusa Predicted Gene
- Lj0g3v0292979.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SIJ8_LOTJA |
186 |
100.0 |
100.0 |
(tr|I3SIJ8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G15750.1 |
149 |
77.5 |
85.4 |
| Symbols: | Alpha-L RNA-binding motif/Ribosomal protein S4 family protein | chr5:5141449-5142701 FORWARD LENGTH=182 |
| Medicago |
Medtr8g102530.3 |
168 |
88.8 |
94.4 |
| U3 small nucleolar ribonucleoprotein IMP3 | HC | chr8:43168335-43171146 | 20130731 |
| Soybean |
Glyma20g30110.1 |
176 |
94.4 |
96.6 |
|
| LJGI |
gnl|LJGI|BW619567 |
505 |
98.9 |
98.9 |
similar to UniRef100_A7PAF2 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0292979.1 |
length: 89 aa. |
| IPR001912 |
Ribosomal protein S4/S9, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Molecular Function |
GO:0019843 |
rRNA binding |
|
|
| HMMPfam |
PF00163 |
Ribosomal_S4 |
4.1e-08 |
4-87 |
| IPR022801 |
Ribosomal protein S4/S9 |
| HMMPanther |
PTHR11831 |
30S |
3.8e-41 |
1-89 |
| no_ID |
|
| HMMPanther |
PTHR11831:SF1 |
U3 |
3.8e-41 |
1-89 |
- Wolf-PSORT
Lj0g3v0292979.1 nucl 9, cyto 2, chlo 1, mito 1, plas 1, chlo_mito 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0292979.1 |
|