Miyakogusa Predicted Gene

Lj0g3v0291969.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KD31_SOYBN 770 85.2 91.7 (tr|I1KD31) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G60940.1 592 65.3 80.2 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:24523092-24525655 FORWARD LENGTH=429
Medicago Medtr2g060520.1 781 84.8 93.1 | cleavage stimulation factor 50 kDa subunit | HC | chr2:25668836-25676713 | 20130731
Soybean Glyma06g22360.1 769 85.2 91.7  
LJGI gnl|LJGI|TC72464 198 100.0 100.0 similar to UniRef100_A7QHY7 Cluster: Chromosome chr17 scaffold_101, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_101, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0291969.2 length: 434 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0039 118-152
173-209
271-299
318-343
HMMSmart SM00320 WD40 0.92 114-153
170-209
215-253
262-299
302-343
391-431
ProfileScan PS50082 WD_REPEATS_2 10.107 121-162
177-218
274-308
323-352
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 5.4e-59 112-431
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 36.147 121-434
superfamily SSF50978 WD40 9.5e-61 111-431
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 330-344
no_ID  
HMMPanther PTHR22840 FAMILY 3.1e-254 8-434
HMMPanther PTHR22840:SF3 SUBFAMILY 3.1e-254 8-434
Wolf-PSORT
Lj0g3v0291969.2	nucl 5, cyto 5, cyto_nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0291969.2