Miyakogusa Predicted Gene
- Lj0g3v0290499.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SMP1_LOTJA |
322 |
90.2 |
90.2 |
(tr|I3SMP1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G16444.1 |
149 |
50.0 |
65.4 |
| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178 |
| Medicago |
Medtr8g073600.1 |
258 |
70.9 |
80.6 |
| CHD5-like protein | HC | chr8:31118483-31126176 | 20130731 |
| Soybean |
Glyma09g33080.4 |
274 |
77.1 |
82.9 |
|
| LJGI |
gnl|LJGI|TC73345 |
1033 |
99.8 |
99.8 |
weakly similar to UniRef100_A7QWN5 Cluster: Chromosome chr4 scaffold_205, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_205, whole genome shotgun sequence - Vitis vinifera (Grape), partial (77%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0290499.1 |
length: 174 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Coil |
coil |
coiled-coil |
NA |
70-91 |
| HMMPfam |
PF04420 |
CHD5 |
2.2e-09 |
30-161 |
| Seg |
seg |
seg |
NA |
68-83 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
10 |
32 |
| 105 |
127 |
| 143 |
165 |
- Wolf-PSORT
Lj0g3v0290499.1 vacu 10, cyto 1, plas 1, E.R. 1, golg 1, golg_plas 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0290499.1 |
|