Miyakogusa Predicted Gene

Lj0g3v0286629.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S483_LOTJA 384 83.1 83.1 (tr|I3S483) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G25500.4 252 74.9 88.0 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350
Medicago Medtr8g032590.6 334 69.9 76.4 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr8:12497703-12493893 | 20130731
Soybean Glyma03g01920.1 340 74.9 78.2  
LJGI gnl|LJGI|TC61003 1487 100.0 100.0 similar to UniRef100_A7PY01 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (95%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0286629.2 length: 249 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.5e-12 4-62
97-159
HMMSmart SM00360 RNA 1.3e-15 3-70
96-162
ProfileScan PS50102 RRM 15.119 2-74
95-166
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.8e-17 4-80
89-170
no_ID  
HMMPanther PTHR10548 SPLICING 1.9e-105 1-249
HMMPanther PTHR10548:SF23 ARGININE/SERINE-RICH 1.9e-105 1-249
Seg seg seg NA 166-182
184-206
237-249
superfamily SSF54928 RNA-binding 4.3e-32 1-173
Wolf-PSORT
Lj0g3v0286629.2	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0286629.2