Miyakogusa Predicted Gene
- Lj0g3v0286319.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MSC9_SOYBN |
151 |
64.7 |
86.3 |
(tr|K7MSC9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G09910.1 |
66.6 |
43.2 |
66.7 |
| Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675 |
| Medicago |
Medtr8g068110.3 |
145 |
64.2 |
78.9 |
| rhamnogalacturonate lyase B-like protein | HC | chr8:28379569-28387444 | 20130731 |
| Soybean |
Glyma18g27090.1 |
135 |
61.8 |
79.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0286319.1 |
length: 109 aa. |
| IPR010325 |
Rhamnogalacturonate lyase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06045 |
Rhamnogal_lyase |
8.8e-16 |
52-109 |
| no_ID |
|
| HMMPanther |
PTHR32018 |
FAMILY |
3.1e-12 |
5-109 |
| HMMPanther |
PTHR32018:SF0 |
SUBFAMILY |
3.1e-12 |
5-109 |
| ProfileScan |
PS51257 |
PROKAR_LIPOPROTEIN |
7.000 |
1-30 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
11 |
33 |
- Wolf-PSORT
Lj0g3v0286319.1 nucl 8, chlo 2, cyto 2, extr 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0286319.1 |
|