Miyakogusa Predicted Gene

Lj0g3v0285989.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J341_MEDTR 1051 78.0 85.9 (tr|G7J341) ABC transporter B family member OS=Medicago truncatula GN=MTR_3g086430 PE=3 SV=1
TAIR_pep AT3G28345.1 690 57.1 77.2 | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240
Medicago Medtr3g086430.1 1050 78.0 85.9 | multidrug resistance-associated protein ABC domain protein | HC | chr3:39152403-39158029 | 20130731
Soybean Glyma18g01610.1 970 73.8 82.6  
LJGI gnl|LJGI|TC64957 936 100.0 100.0 similar to UniRef100_A7P469 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0285989.2 length: 661 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 3e-35 94-363
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 8.8e-25 459-584
ProfileScan PS50893 ABC_TRANSPORTER_2 25.377 417-653
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 2.1e-15 444-637
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 6.7e-53 81-568
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 556-570
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 39.433 94-381
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.1e-70 396-639
no_ID  
Coil coil coiled-coil NA 260-281
Gene3D G3DSA:1.20.1560.10 no description 1e-44 81-401
Gene3D G3DSA:3.40.50.300 no description 5.9e-85 416-642
HMMPanther PTHR24221 FAMILY 1.1e-286 5-657
HMMPanther PTHR24221:SF24 SUBFAMILY 1.1e-286 5-657
Seg seg seg NA 45-65
68-78
Putative transmembrane regions
  From To
TM segments
SOSUI		 97 119
132 154
222 244
Wolf-PSORT
Lj0g3v0285989.2	plas 6, E.R. 3, golg_plas 3, cysk_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0285989.2