Miyakogusa Predicted Gene

Lj0g3v0285649.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JMN6_SOYBN 1086 79.8 86.4 (tr|I1JMN6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G22690.2 526 38.6 60.7 | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842
Medicago Medtr5g006570.1 516 38.9 59.1 | pentatricopeptide (PPR) repeat protein | HC | chr5:988953-991582 | 20130731
Soybean Glyma03g25720.1 1086 79.8 86.4  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0285649.1 length: 668 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.017 28-55
58-85
234-259
435-460
HMMPfam PF13041 PPR_2 6.3e-09 160-205
260-304
361-408
HMMTigr TIGR00756 PPR: 3.8e-08 28-55
58-91
161-195
263-296
364-396
ProfileScan PS51375 PPR 5.503 56-90
25-55
159-193
260-294
229-259
295-329
361-395
330-360
396-431
432-462
497-532
no_ID  
HMMPanther PTHR24015 FAMILY 2.6e-258 10-668
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 2.6e-258 10-668
HMMPfam PF14432 DYW_deaminase 4.4e-13 546-658
Putative transmembrane regions
  From To
TM segments
SOSUI		 223 244
293 315
Wolf-PSORT
Lj0g3v0285649.1	mito 6.5, chlo_mito 5.5, chlo 3.5, nucl 2, cyto 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0285649.1