Miyakogusa Predicted Gene

Lj0g3v0283109.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LMF9_SOYBN 737 82.3 85.9 (tr|I1LMF9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G13840.2 656 73.9 79.7 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468677-4470706 REVERSE LENGTH=481
Medicago Medtr3g067940.1 731 84.0 87.1 | cell cycle switch protein CCS52a | HC | chr3:30567275-30564377 | 20130731
Soybean Glyma11g34060.1 728 77.9 81.3  
LJGI gnl|LJGI|TC63439 1457 100.0 100.0 homologue to UniRef100_Q6UZ79 Cluster: B-type cell cycle switch protein ccs52B; n=1; Medicago truncatula|Rep: B-type cell cycle switch protein ccs52B - Medicago truncatula (Barrel medic), partial (52%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0283109.3 length: 677 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.2e-06 137-168
180-215
224-249
444-475
487-522
531-567
616-652
HMMSmart SM00320 WD40 9.7e-08 48-89
91-132
135-172
176-215
218-256
355-396
398-439
442-479
483-522
525-567
613-652
ProfileScan PS50082 WD_REPEATS_2 14.452 183-224
490-531
532-576
620-653
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.9e-57 39-250
346-652
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 34.355 85-661
superfamily SSF50978 WD40 5.7e-37 347-653
40-250
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 554-568
639-653
no_ID  
HMMPanther PTHR19918 CELL 1.4e-215 275-677
HMMPanther PTHR19918:SF0 SUBFAMILY 1.4e-215 275-677
Seg seg seg NA 39-54
293-315
346-361
Wolf-PSORT
Lj0g3v0283109.3	nucl 5, mito 5, chlo 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0283109.3