Miyakogusa Predicted Gene

Lj0g3v0282539.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K4D0_SOYBN 1070 95.9 97.9 (tr|I1K4D0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G05420.2 1006 88.6 96.1 | Symbols: DDB1A | damaged DNA binding protein 1A | chr4:2746288-2752663 FORWARD LENGTH=1067
Medicago Medtr8g089380.1 1062 95.0 97.9 | damaged DNA-binding protein 1A | HC | chr8:37153843-37142364 | 20130731
Soybean Glyma05g30530.1 1070 95.9 97.9  
LJGI gnl|LJGI|TC62582 1296 99.0 99.0 homologue to UniRef100_A7Q1B3 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0282539.1 length: 536 aa.
IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03178 CPSF_A 2.7e-85 192-505
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.1e-06 175-339
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
superfamily SSF50978 WD40 2.2e-10 6-343
no_ID  
HMMPanther PTHR10644 DNA 3.2e-235 1-536
HMMPanther PTHR10644:SF3 DNA 3.2e-235 1-536
Putative transmembrane regions
  From To
TM segments
SOSUI		 27 49
Wolf-PSORT
Lj0g3v0282539.1	plas 11, E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0282539.1