Miyakogusa Predicted Gene

Lj0g3v0282239.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NEQ9_SOYBN 1544 68.9 78.5 (tr|I1NEQ9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G43530.1 1161 60.6 75.4 | Symbols: | Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277
Medicago Medtr1g044120.1 1643 70.4 79.5 | DNA repair helicase rad5,16, putative | HC | chr1:16509136-16515621 | 20130731
Soybean Glyma20g21940.1 1510 67.8 77.4  
LJGI gnl|LJGI|TC58907 95.6 87.5 87.5  
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0282239.1 length: 1129 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 3.4e-78 449-813
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 9.6e-16 999-1076
HMMSmart SM00490 helicase 7.1e-23 993-1076
ProfileScan PS51194 HELICASE_CTER 16.753 966-1125
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 1e-08 893-932
ProfileScan PS50089 ZF_RING_2 12.976 893-933
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.7e-14 889-941
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.2e-26 442-715
ProfileScan PS51192 HELICASE_ATP_BIND_1 17.746 502-696
IPR014905 HIP116, Rad5p N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08797 HIRAN 3e-09 259-324
HMMSmart SM00910 no description 0.00075 228-325
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 908-917
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.4e-63 370-734
735-1116
no_ID  
Coil coil coiled-coil NA 96-117
Gene3D G3DSA:3.40.50.300 no description 7.4e-20 505-693
958-1104
HMMPanther PTHR10799 SWI/SNF-RELATED 0 85-1128
HMMPanther PTHR10799:SF164SNF2 DOMAIN-CONTAINING 0 85-1128
HMMPfam PF13923 zf-C3HC4_2 1.1e-10 891-934
Seg seg seg NA 6-21
25-32
73-84
181-208
superfamily SSF57850 RING/U-box 1.2e-15 867-939
Wolf-PSORT
Lj0g3v0282239.1	nucl 9, E.R. 2, chlo 1, cyto 1, cysk 1, E.R._vacu 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0282239.1