Miyakogusa Predicted Gene
- Lj0g3v0282189.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1NER6_SOYBN |
336 |
76.8 |
80.9 |
(tr|I1NER6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G14410.2 |
208 |
63.5 |
74.3 |
| Symbols: bHLH104 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:8300418-8301503 FORWARD LENGTH=277 |
| Medicago |
Medtr1g043430.1 |
306 |
68.3 |
74.0 |
| BHLH domain class transcription factor | HC | chr1:16308113-16312292 | 20130731 |
| Soybean |
Glyma20g22010.1 |
336 |
76.8 |
80.9 |
|
| LJGI |
gnl|LJGI|TC76067 |
1247 |
99.8 |
99.8 |
weakly similar to UniRef100_A9RJX7 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (52%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0282189.1 |
length: 216 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
2.3e-10 |
69-133 |
| HMMPfam |
PF00010 |
HLH |
1.1e-08 |
65-112 |
| HMMSmart |
SM00353 |
helix |
2.5e-09 |
67-118 |
| ProfileScan |
PS50888 |
BHLH |
13.205 |
61-112 |
| superfamily |
SSF47459 |
HLH, |
7.6e-13 |
51-130 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
102-158 |
| HMMPanther |
PTHR23042 |
CIRCADIAN |
6.6e-31 |
42-155 |
| HMMPanther |
PTHR23042:SF25 |
NAI1, |
6.6e-31 |
42-155 |
| Seg |
seg |
seg |
NA |
118-131 |
- Wolf-PSORT
Lj0g3v0282189.1 nucl 6, chlo 3, cysk_nucl 3, cyto 2, plas 2, chlo_mito 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0282189.1 |
|