Miyakogusa Predicted Gene

Lj0g3v0280999.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1J6I2_SOYBN 408 83.9 90.4 (tr|I1J6I2) U6 snRNA phosphodiesterase OS=Glycine max PE=3 SV=1

TAIR_pep AT5G51170.1 306 66.2 79.3 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20793906-20795330 REVERSE LENGTH=285

Medicago Medtr0053s0020.1 400 79.9 89.7 | U6 snRNA phosphodiesterase-like protein, putative | HC | scaffold0053:5359-11363 | 20130731

Soybean Glyma01g17870.3 408 83.9 90.4

LJGI gnl|LJGI|BP081709 557 100.0 100.0 similar to UniRef100_Q0DZ34 Cluster: Os02g0651000 protein; n=2; Oryza sativa Japonica Group|Rep: Os02g0651000 protein - Oryza sativa subsp. japonica (Rice), partial (31%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0280999.1 length: 282 aa.

IPR027521 Putative U6 snRNA phosphodiesterase

method AccNumber shortName E-value location

Molecular Function GO:0004540 ribonuclease activity

Biological Process GO:0034477 U6 snRNA 3'-end processing

HAMAP MF_03040 USB1 26.923 3-279

HMMPanther PTHR13522 UNCHARACTERIZED 3.2e-70 1-282

HMMPfam PF09749 HVSL 6.5e-56 53-277

no_ID

Seg seg seg NA 12-25
34-46

Wolf-PSORT

Lj0g3v0280999.1 cyto 7, nucl 3, extr 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0280999.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1J6I2_SOYBN	408	83.9	90.4	(tr\|I1J6I2) U6 snRNA phosphodiesterase OS=Glycine max PE=3 SV=1
TAIR_pep	AT5G51170.1	306	66.2	79.3	\| Symbols: \| unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:20793906-20795330 REVERSE LENGTH=285
Medicago	Medtr0053s0020.1	400	79.9	89.7	\| U6 snRNA phosphodiesterase-like protein, putative \| HC \| scaffold0053:5359-11363 \| 20130731
Soybean	Glyma01g17870.3	408	83.9	90.4
LJGI	gnl\|LJGI\|BP081709	557	100.0	100.0	similar to UniRef100_Q0DZ34 Cluster: Os02g0651000 protein; n=2; Oryza sativa Japonica Group\|Rep: Os02g0651000 protein - Oryza sativa subsp. japonica (Rice), partial (31%)

IPR027521	Putative U6 snRNA phosphodiesterase
Lj0g3v0280999.1				length: 282 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004540	ribonuclease activity
Biological Process	GO:0034477	U6 snRNA 3'-end processing
HAMAP	MF_03040	USB1	26.923	3-279
HMMPanther	PTHR13522	UNCHARACTERIZED	3.2e-70	1-282
HMMPfam	PF09749	HVSL	6.5e-56	53-277
no_ID
Seg	seg	seg	NA	12-25 34-46