Miyakogusa Predicted Gene
- Lj0g3v0280159.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q84ZV5_SOYBN |
674 |
71.1 |
81.4 |
(tr|Q84ZV5) Polyprotein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
ATMG00860.1 |
132 |
49.2 |
69.8 |
| Symbols: ORF158 | DNA/RNA polymerases superfamily protein | chrM:235916-236392 FORWARD LENGTH=158 |
| Medicago |
Medtr1g052140.1 |
122 |
44.4 |
66.7 |
| DNA/RNA polymerase superfamily protein, putative | LC | chr1:21026576-21020690 | 20130731 |
| Soybean |
Glyma03g23280.1 |
488 |
55.8 |
70.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0280159.1 |
length: 447 aa. |
| IPR000477 |
Reverse transcriptase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Molecular Function |
GO:0003964 |
RNA-directed DNA polymerase activity |
|
|
| Biological Process |
GO:0006278 |
RNA-dependent DNA replication |
|
|
| HMMPfam |
PF00078 |
RVT_1 |
7e-17 |
198-356 |
| ProfileScan |
PS50878 |
RT_POL |
10.372 |
179-358 |
| no_ID |
|
| Gene3D |
G3DSA:3.10.10.10 |
no description |
4.8e-36 |
148-277 |
| Gene3D |
G3DSA:3.30.70.270 |
no description |
5.5e-07 |
278-358 |
| HMMPanther |
PTHR10178 |
GAG/POL/ENV |
1.8e-206 |
1-447 |
| HMMPanther |
PTHR10178:SF14 |
RETROVIRUS |
1.8e-206 |
1-447 |
| superfamily |
SSF56672 |
DNA/RNA |
2.6e-136 |
122-447 |
- Wolf-PSORT
Lj0g3v0280159.1 cyto_E.R. 6, cyto 5.5, E.R. 5.5, nucl 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0280159.1 |
|