Miyakogusa Predicted Gene

Lj0g3v0279609.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1NIU3_SOYBN 1124 79.3 85.2 (tr|I1NIU3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G54490.1 985 69.9 79.3 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947

Medicago Medtr7g114570.1 1030 73.1 81.8 | 5'-3' exoribonuclease | HC | chr7:47305879-47315956 | 20130731

Soybean Glyma20g37260.2 1123 79.3 85.2

LJGI gnl|LJGI|TC63057 454 86.5 86.5 similar to UniRef100_A7Q5V8 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0279609.2 length: 681 aa.

IPR001878 Zinc finger, CCHC-type

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:4.10.60.10 no description 0.00011 253-272

HMMPfam PF00098 zf-CCHC 4.6e-06 256-271

HMMSmart SM00343 zinc 0.00016 256-272

ProfileScan PS50158 ZF_CCHC 10.180 256-271

IPR004859 Putative 5-3 exonuclease

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004527 exonuclease activity

Cellular Component GO:0005622 intracellular

HMMPfam PF03159 XRN_N 2.6e-97 36-247

IPR017151 5'-3' exoribonuclease 2

Molecular Function GO:0004534 5'-3' exoribonuclease activity

Cellular Component GO:0005634 nucleus

Biological Process GO:0006139 nucleobase-containing compound metabolic process

HMMPIR PIRSF037239 5'-3' 0 1-681

IPR027073 5'-3' exoribonuclease

HMMPanther PTHR12341 5'->3' 0 2-681

no_ID

Coil coil coiled-coil NA 111-132

HMMPanther PTHR12341:SF7 SUBFAMILY 0 2-681

Seg seg seg NA 110-136
324-335

Wolf-PSORT

Lj0g3v0279609.2 cyto 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0279609.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1NIU3_SOYBN	1124	79.3	85.2	(tr\|I1NIU3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G54490.1	985	69.9	79.3	\| Symbols: AIN1, EIN5, XRN4, ATXRN4 \| exoribonuclease 4 \| chr1:20350300-20356650 FORWARD LENGTH=947
Medicago	Medtr7g114570.1	1030	73.1	81.8	\| 5'-3' exoribonuclease \| HC \| chr7:47305879-47315956 \| 20130731
Soybean	Glyma20g37260.2	1123	79.3	85.2
LJGI	gnl\|LJGI\|TC63057	454	86.5	86.5	similar to UniRef100_A7Q5V8 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)

IPR001878	Zinc finger, CCHC-type
Lj0g3v0279609.2				length: 681 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:4.10.60.10	no description	0.00011	253-272
HMMPfam	PF00098	zf-CCHC	4.6e-06	256-271
HMMSmart	SM00343	zinc	0.00016	256-272
ProfileScan	PS50158	ZF_CCHC	10.180	256-271
IPR004859	Putative 5-3 exonuclease
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004527	exonuclease activity
Cellular Component	GO:0005622	intracellular
HMMPfam	PF03159	XRN_N	2.6e-97	36-247
IPR017151	5'-3' exoribonuclease 2
Molecular Function	GO:0004534	5'-3' exoribonuclease activity
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006139	nucleobase-containing compound metabolic process
HMMPIR	PIRSF037239	5'-3'	0	1-681
IPR027073	5'-3' exoribonuclease
HMMPanther	PTHR12341	5'->3'	0	2-681
no_ID
Coil	coil	coiled-coil	NA	111-132
HMMPanther	PTHR12341:SF7	SUBFAMILY	0	2-681
Seg	seg	seg	NA	110-136 324-335