Miyakogusa Predicted Gene

Lj0g3v0279579.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IAS0_MEDTR 709 66.3 78.7 (tr|G7IAS0) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g108270 PE=4 SV=1
TAIR_pep AT1G71060.1 593 60.1 80.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26805651-26807183 REVERSE LENGTH=510
Medicago Medtr1g108270.1 710 66.3 78.7 | PPR containing plant-like protein | HC | chr1:48926827-48924799 | 20130731
Soybean Glyma10g41080.1 679 72.2 84.8  
LJGI gnl|LJGI|TC75881 668 99.1 99.1 weakly similar to UniRef100_A7P3I7 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0279579.1 length: 507 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0023 164-186
402-432
441-467
HMMPfam PF13041 PPR_2 4.2e-12 193-236
258-305
330-375
HMMPfam PF13812 PPR_3 0.013 121-151
HMMTigr TIGR00756 PPR: 1.3e-05 161-188
193-224
261-294
297-328
332-364
367-401
403-434
442-469
ProfileScan PS51375 PPR 10.041 154-188
120-150
189-223
259-293
224-258
294-328
329-363
364-399
400-434
435-469
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.3e-06 432-464
no_ID  
HMMPanther PTHR24015 FAMILY 6.7e-127 9-503
HMMPanther PTHR24015:SF0 SUBFAMILY 6.7e-127 9-503
Seg seg seg NA 158-169
superfamily SSF48452 TPR-like 0.012 259-464
118-216
Putative transmembrane regions
  From To
TM segments
SOSUI		 430 452
Wolf-PSORT
Lj0g3v0279579.1	chlo 10, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0279579.1