Miyakogusa Predicted Gene
- Lj0g3v0279519.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IAW3_MEDTR |
155 |
45.7 |
63.4 |
(tr|G7IAW3) 60S ribosomal protein L7 OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1 |
| TAIR_pep |
AT3G18990.1 |
73.2 |
35.5 |
52.7 |
| Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341 |
| Medicago |
Medtr8g103940.1 |
154 |
44.9 |
64.2 |
| transcriptional factor B3 family protein | LC | chr8:43749832-43752569 | 20130731 |
| Soybean |
Glyma09g20060.1 |
133 |
38.0 |
51.5 |
|
| LJGI |
gnl|LJGI|DC596542 |
266 |
86.4 |
86.4 |
weakly similar to UniRef100_A2Q2N6 Cluster: Transcriptional factor B3; n=1; Medicago truncatula|Rep: Transcriptional factor B3 - Medicago truncatula (Barrel medic), partial (20%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0279519.1 |
length: 241 aa. |
| IPR003340 |
B3 DNA binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02362 |
B3 |
1.6e-12 |
55-137 |
| HMMSmart |
SM01019 |
B3 |
1.6e-12 |
45-137 |
| ProfileScan |
PS50863 |
B3 |
11.603 |
44-137 |
| IPR015300 |
DNA-binding pseudobarrel domain |
| Gene3D |
G3DSA:2.40.330.10 |
no description |
1.4e-17 |
42-137 |
| superfamily |
SSF101936 |
DNA-binding |
2.6e-20 |
37-139 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
164-173 |
- Wolf-PSORT
Lj0g3v0279519.1 nucl 7, cyto 3, mito 1, extr 1, pero 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0279519.1 |
|