Miyakogusa Predicted Gene
- Lj0g3v0279009.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LYS8_SOYBN |
1396 |
84.9 |
89.8 |
(tr|I1LYS8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G20190.1 |
1052 |
68.1 |
80.6 |
| Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439 |
| Medicago |
Medtr1g069165.1 |
1406 |
85.5 |
90.9 |
| CLIP-associated protein | HC | chr1:29760559-29744753 | 20130731 |
| Soybean |
Glyma13g19230.1 |
1396 |
84.9 |
89.8 |
|
| LJGI |
gnl|LJGI|TC80963 |
1419 |
100.0 |
100.0 |
similar to UniRef100_A7Q1F1 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0279009.1 |
length: 801 aa. |
| IPR011989 |
Armadillo-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
1.5e-34 |
567-770 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
2.2e-46 |
152-791 |
| IPR024395 |
CLASP N-terminal domain |
| HMMPfam |
PF12348 |
CLASP_N |
2.6e-14 |
163-355 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
637-658 |
| HMMPanther |
PTHR21567 |
CLASP |
0 |
1-797 |
| HMMPanther |
PTHR21567:SF9 |
GB |
0 |
1-797 |
| HMMPfam |
PF12755 |
Vac14_Fab1_bd |
1.2e-05 |
587-674 |
| Seg |
seg |
seg |
NA |
120-131 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
749 |
771 |
- Wolf-PSORT
Lj0g3v0279009.1 chlo 3, plas 3, golg 3, golg_plas 3, nucl 2, cysk_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0279009.1 |
|