Miyakogusa Predicted Gene
- Lj0g3v0278299.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KB99_SOYBN |
382 |
70.0 |
80.1 |
(tr|K7KB99) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G30800.1 |
323 |
59.4 |
73.4 |
| Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299 |
| Medicago |
Medtr5g090430.1 |
360 |
65.3 |
78.1 |
| ATP-dependent RNA helicase, putative | HC | chr5:39384456-39392519 | 20130731 |
| Soybean |
Glyma02g45220.1 |
315 |
65.6 |
76.2 |
|
| LJGI |
gnl|LJGI|TC71694 |
103 |
87.0 |
87.0 |
similar to UniRef100_A7PJR9 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0278299.1 |
length: 269 aa. |
| IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| ProfileScan |
PS51192 |
HELICASE_ATP_BIND_1 |
9.698 |
1-146 |
| IPR020683 |
Ankyrin repeat-containing domain |
| Gene3D |
G3DSA:1.25.40.20 |
no description |
1.7e-05 |
218-268 |
| ProfileScan |
PS50297 |
ANK_REP_REGION |
11.267 |
224-269 |
| superfamily |
SSF48403 |
Ankyrin |
1.3e-06 |
199-267 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
6.3e-13 |
8-128 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
5.2e-19 |
8-130 |
| HMMPanther |
PTHR18934 |
ATP-DEPENDENT |
2.8e-61 |
4-190 |
| HMMPanther |
PTHR18934:SF68 |
SUBFAMILY |
2.8e-61 |
4-190 |
| Seg |
seg |
seg |
NA |
130-134 |
- Wolf-PSORT
Lj0g3v0278299.1 nucl 9, cyto 2, chlo 1, mito 1, pero 1, chlo_mito 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0278299.1 |
|