Miyakogusa Predicted Gene
- Lj0g3v0277869.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
database |
Accession |
Score |
Iden (%) |
Posi (%) |
Definition |
TrEMBL |
I1LXA9_SOYBN |
774 |
85.2 |
92.6 |
(tr|I1LXA9) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
TAIR_pep |
AT5G25800.1 |
590 |
62.8 |
82.2 |
| Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:8979761-8982724 REVERSE LENGTH=567 |
Medicago |
Medtr1g029410.1 |
748 |
81.3 |
90.1 |
| small RNA degrading nuclease | HC | chr1:10081820-10091351 | 20130731 |
Soybean |
Glyma13g09210.1 |
758 |
80.2 |
87.2 |
|
LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0277869.2 |
length: 443 aa. |
IPR006055 |
Exonuclease |
method |
AccNumber |
shortName |
E-value |
location |
Molecular Function |
GO:0004527 |
exonuclease activity |
|
|
Cellular Component |
GO:0005622 |
intracellular |
|
|
HMMSmart |
SM00479 |
no description |
5.7e-48 |
91-250 |
IPR012337 |
Ribonuclease H-like domain |
Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
superfamily |
SSF53098 |
Ribonuclease |
9.3e-30 |
91-246 |
IPR013520 |
Exonuclease, RNase T/DNA polymerase III |
HMMPfam |
PF00929 |
RNase_T |
2.1e-26 |
93-240 |
IPR017849 |
Alkaline phosphatase-like, alpha/beta/alpha |
Molecular Function |
GO:0003824 |
catalytic activity |
|
|
Biological Process |
GO:0008152 |
metabolic process |
|
|
Gene3D |
G3DSA:3.40.720.10 |
no description |
4.7e-05 |
258-397 |
no_ID |
|
Gene3D |
G3DSA:3.30.420.10 |
no description |
1.3e-55 |
91-252 |
HMMPanther |
PTHR12801 |
EXONUCLEASE |
7.4e-135 |
44-303 |
HMMPanther |
PTHR12801:SF19 |
EXONUCLEASE |
7.4e-135 |
44-303 |
- Wolf-PSORT
Lj0g3v0277869.2 cyto 9, chlo 2, nucl 1, mito 1, pero 1
- PTS1 (Peroxisome targeting signal type 1)
entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
Lj0g3v0277869.2 |
Not targeted |
-59.610 |
-25.016 |
-9.501 |
88.27% |
-25.092
|