Miyakogusa Predicted Gene
- Lj0g3v0277869.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LXA9_SOYBN |
976 |
80.4 |
87.9 |
(tr|I1LXA9) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G25800.1 |
726 |
59.9 |
76.8 |
| Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:8979761-8982724 REVERSE LENGTH=567 |
| Medicago |
Medtr1g029410.1 |
908 |
75.5 |
83.8 |
| small RNA degrading nuclease | HC | chr1:10081820-10091351 | 20130731 |
| Soybean |
Glyma13g09210.1 |
960 |
76.8 |
83.9 |
|
| LJGI |
gnl|LJGI|AV778037 |
517 |
100.0 |
100.0 |
similar to UniRef100_A7NSL9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0277869.1 |
length: 595 aa. |
| IPR006055 |
Exonuclease |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004527 |
exonuclease activity |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| HMMSmart |
SM00479 |
no description |
5.7e-48 |
243-402 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
9.3e-30 |
243-398 |
| IPR013520 |
Exonuclease, RNase T/DNA polymerase III |
| HMMPfam |
PF00929 |
RNase_T |
3.6e-26 |
245-392 |
| IPR017849 |
Alkaline phosphatase-like, alpha/beta/alpha |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| Gene3D |
G3DSA:3.40.720.10 |
no description |
7.9e-05 |
410-549 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.420.10 |
no description |
2.3e-55 |
243-404 |
| HMMPanther |
PTHR12801 |
EXONUCLEASE |
7.4e-135 |
196-455 |
| HMMPanther |
PTHR12801:SF19 |
EXONUCLEASE |
7.4e-135 |
196-455 |
- Wolf-PSORT
Lj0g3v0277869.1 chlo 4, nucl 3.5, plas 3, cysk_nucl 2.5, mito 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0277869.1 |
Not targeted |
-59.610 |
-25.016 |
-9.501 |
88.27% |
-25.092
|