Miyakogusa Predicted Gene

Lj0g3v0276749.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JBA6_SOYBN 807 85.8 90.6 (tr|I1JBA6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G62110.1 614 66.3 77.5 | Symbols: | Pectin lyase-like superfamily protein | chr3:22997313-22999503 REVERSE LENGTH=471
Medicago Medtr7g110710.2 773 80.1 88.9 | polygalacturonase/glycoside hydrolase family protein | HC | chr7:45367344-45371719 | 20130731
Soybean Glyma10g27840.1 800 85.0 89.7  
LJGI gnl|LJGI|GO021815 1233 98.0 98.0 similar to UniRef100_A7Q0Z0 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (39%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0276749.1 length: 467 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 1e-39 143-419
IPR006626 Parallel beta-helix repeat
HMMSmart SM00710 Parallel 1e+03 212-238
239-271
273-294
300-321
329-350
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 4.9e-107 25-431
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 1.3e-117 40-421
no_ID  
HMMPanther PTHR31339 FAMILY 7.2e-190 40-466
HMMPanther PTHR31339:SF0 SUBFAMILY 7.2e-190 40-466
ProfileScan PS51257 PROKAR_LIPOPROTEIN 6.000 1-32
Seg seg seg NA 152-166
Putative transmembrane regions
  From To
TM segments
SOSUI		 4 26
Wolf-PSORT
Lj0g3v0276749.1	nucl 3, extr 3, chlo 2, cyto 2, nucl_plas 2, mito 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0276749.1