Miyakogusa Predicted Gene

Lj0g3v0275259.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MXY1_SOYBN 660 60.6 71.6 (tr|K7MXY1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G09360.1 421 43.3 59.2 | Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604
Medicago Medtr6g027510.1 625 55.9 68.3 | transcription factor, putative | HC | chr6:9506956-9492623 | 20130731
Soybean Glyma16g03970.1 509 46.7 55.3  
LJGI gnl|LJGI|FS330398 1053 98.6 98.6 similar to UniRef100_A7QRG5 Cluster: Chromosome chr8 scaffold_150, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_150, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0275259.2 length: 556 aa.
IPR000812 Transcription factor TFIIB
method AccNumber shortName E-value location
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
FPrintScan PR00685 TIFACTORIIB 6.2e-08 16-36
119-138
213-229
HMMPanther PTHR11618 TRANSCRIPTION 1.4e-151 1-543
IPR011665 Brf1-like TBP-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0045893 positive regulation of transcription, DNA-dependent    
HMMPfam PF07741 BRF1 2.1e-24 420-541
IPR013150 Transcription factor TFIIB, cyclin-like domain
Molecular Function GO:0017025 TBP-class protein binding    
HMMPfam PF00382 TFIIB 1.1e-10 78-143
192-250
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 5e-20 65-163
186-263
HMMSmart SM00385 domain 0.3 76-158
176-279
superfamily SSF47954 Cyclin-like 7.4e-19 72-167
171-281
no_ID  
Coil coil coiled-coil NA 260-281
Gene3D G3DSA:1.20.5.650 no description 2.8e-08 398-455
HMMPanther PTHR11618:SF4 TRANSCRIPTION 1.4e-151 1-543
Seg seg seg NA 324-332
411-425
453-472
479-494
superfamily SSF57783 Zinc 2.1e-06 2-48
Wolf-PSORT
Lj0g3v0275259.2	chlo 4, cyto_nucl 4, nucl 3.5, cyto 3.5, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0275259.2