Miyakogusa Predicted Gene

Lj0g3v0273499.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL A5AMC2_VITVI 414 73.4 82.3 (tr|A5AMC2) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033508 PE=4 SV=1

TAIR_pep AT5G13010.1 397 73.4 84.5 | Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255

Medicago Medtr2g098440.1 408 72.7 82.3 | Pre-mRNA-splicing factor ATP-dependent RNA helicase | HC | chr2:42091662-42101447 | 20130731

Soybean Glyma15g03660.1 406 75.1 83.6

LJGI gnl|LJGI|BP043658 751 99.7 99.7 homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0273499.1 length: 326 aa.

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

method AccNumber shortName E-value location

ProfileScan PS51192 HELICASE_ATP_BIND_1 10.855 214-326

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 4e-28 198-311

no_ID

Gene3D G3DSA:3.40.50.300 no description 2.1e-31 204-310

HMMPanther PTHR18934 ATP-DEPENDENT 2e-73 156-312

HMMPanther PTHR18934:SF68 SUBFAMILY 2e-73 156-312

Seg seg seg NA 16-27
222-226

Wolf-PSORT

Lj0g3v0273499.1 nucl 7, cysk 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0273499.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A5AMC2_VITVI	414	73.4	82.3	(tr\|A5AMC2) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033508 PE=4 SV=1
TAIR_pep	AT5G13010.1	397	73.4	84.5	\| Symbols: EMB3011 \| RNA helicase family protein \| chr5:4122747-4128660 FORWARD LENGTH=1255
Medicago	Medtr2g098440.1	408	72.7	82.3	\| Pre-mRNA-splicing factor ATP-dependent RNA helicase \| HC \| chr2:42091662-42101447 \| 20130731
Soybean	Glyma15g03660.1	406	75.1	83.6
LJGI	gnl\|LJGI\|BP043658	751	99.7	99.7	homologue to UniRef100_A7QBN2 Cluster: Chromosome chr1 scaffold_75, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr1 scaffold_75, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)

IPR014001	Helicase, superfamily 1/2, ATP-binding domain
Lj0g3v0273499.1				length: 326 aa.
method	AccNumber	shortName	E-value	location
ProfileScan	PS51192	HELICASE_ATP_BIND_1	10.855	214-326
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	4e-28	198-311
no_ID
Gene3D	G3DSA:3.40.50.300	no description	2.1e-31	204-310
HMMPanther	PTHR18934	ATP-DEPENDENT	2e-73	156-312
HMMPanther	PTHR18934:SF68	SUBFAMILY	2e-73	156-312
Seg	seg	seg	NA	16-27 222-226