Miyakogusa Predicted Gene

Lj0g3v0273489.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LAK4_SOYBN 284 59.2 69.0 (tr|I1LAK4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G24050.1 139 82.7 89.3 | Symbols: GATA1 | GATA transcription factor 1 | chr3:8686060-8687462 FORWARD LENGTH=274

Medicago Medtr1g046680.1 268 59.2 68.2 | GATA type zinc finger transcription factor family protein | HC | chr1:17602830-17601607 | 20130731

Soybean Glyma10g25480.1 284 59.2 69.0

LJGI gnl|LJGI|TC77322 708 100.0 100.0 similar to UniRef100_Q8LAU9 Cluster: GATA transcription factor 1; n=3; Arabidopsis thaliana|Rep: GATA transcription factor 1 - Arabidopsis thaliana (Mouse-ear cress), partial (7%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0273489.1 length: 246 aa.

IPR000679 Zinc finger, GATA-type

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Molecular Function GO:0043565 sequence-specific DNA binding

HMMPfam PF00320 GATA 8.1e-16 176-210

HMMSmart SM00401 zinc 3.7e-16 170-220

PatternScan PS00344 GATA_ZN_FINGER_1 NA 176-201

ProfileScan PS50114 GATA_ZN_FINGER_2 12.387 170-206

IPR013088 Zinc finger, NHR/GATA-type

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:3.30.50.10 no description 8.6e-14 174-208

no_ID

HMMPanther PTHR10071 TRANSCRIPTION 9.2e-43 163-243

HMMPanther PTHR10071:SF113ZINC FINGER 9.2e-43 163-243

Seg seg seg NA 21-27
104-116
128-145

superfamily SSF57716 Glucocorticoid 5.8e-20 170-235

Wolf-PSORT

Lj0g3v0273489.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0273489.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LAK4_SOYBN	284	59.2	69.0	(tr\|I1LAK4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G24050.1	139	82.7	89.3	\| Symbols: GATA1 \| GATA transcription factor 1 \| chr3:8686060-8687462 FORWARD LENGTH=274
Medicago	Medtr1g046680.1	268	59.2	68.2	\| GATA type zinc finger transcription factor family protein \| HC \| chr1:17602830-17601607 \| 20130731
Soybean	Glyma10g25480.1	284	59.2	69.0
LJGI	gnl\|LJGI\|TC77322	708	100.0	100.0	similar to UniRef100_Q8LAU9 Cluster: GATA transcription factor 1; n=3; Arabidopsis thaliana\|Rep: GATA transcription factor 1 - Arabidopsis thaliana (Mouse-ear cress), partial (7%)

IPR000679	Zinc finger, GATA-type
Lj0g3v0273489.1				length: 246 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Molecular Function	GO:0043565	sequence-specific DNA binding
HMMPfam	PF00320	GATA	8.1e-16	176-210
HMMSmart	SM00401	zinc	3.7e-16	170-220
PatternScan	PS00344	GATA_ZN_FINGER_1	NA	176-201
ProfileScan	PS50114	GATA_ZN_FINGER_2	12.387	170-206
IPR013088	Zinc finger, NHR/GATA-type
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:3.30.50.10	no description	8.6e-14	174-208
no_ID
HMMPanther	PTHR10071	TRANSCRIPTION	9.2e-43	163-243
HMMPanther	PTHR10071:SF113ZINC	FINGER	9.2e-43	163-243
Seg	seg	seg	NA	21-27 104-116 128-145
superfamily	SSF57716	Glucocorticoid	5.8e-20	170-235