Miyakogusa Predicted Gene

Lj0g3v0273279.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9RDP2_RICCO 801 96.7 98.7 (tr|B9RDP2) Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1614640 PE=3 SV=1
TAIR_pep AT4G00660.1 766 92.3 95.3 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505
Medicago Medtr7g076800.1 788 96.2 98.7 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr7:28977519-28970435 | 20130731
Soybean Glyma07g07950.1 798 97.7 99.0  
LJGI gnl|LJGI|TC58768 712 100.0 100.0 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_105, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0273279.1 length: 480 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 277-285
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 5.2e-25 387-462
HMMSmart SM00490 helicase 1.2e-30 381-462
ProfileScan PS51194 HELICASE_CTER 22.111 341-480
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1e-44 155-319
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.4e-57 149-345
ProfileScan PS51192 HELICASE_ATP_BIND_1 29.214 161-331
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 10.097 130-158
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.7e-69 197-480
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.1e-44 119-334
337-476
HMMPanther PTHR24031 FAMILY 0 36-480
HMMPanther PTHR24031:SF76 SUBFAMILY 0 36-480
Seg seg seg NA 2-11
20-42
50-58
62-80
Wolf-PSORT
Lj0g3v0273279.1	chlo 7, mito 3.5, cyto_mito 2.5, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0273279.1