Miyakogusa Predicted Gene

Lj0g3v0271549.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MYP1_SOYBN 2437 76.7 84.6 (tr|I1MYP1) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G10370.1 1782 56.4 71.7 | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775
Medicago Medtr3g086770.1 2424 76.0 83.3 | helicase, IBR and zinc finger protein | HC | chr3:39323283-39316838 | 20130731
Soybean Glyma18g01820.1 2445 76.7 84.6  
LJGI gnl|LJGI|TC77032 2032 97.9 97.9 similar to UniRef100_A7R0H0 Cluster: Chromosome undetermined scaffold_309, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_309, whole genome shotgun sequence - Vitis vinifera (Grape), partial (80%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0271549.1 length: 1604 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 7e-14 383-467
HMMSmart SM00490 helicase 3.5e-20 370-468
ProfileScan PS51194 HELICASE_CTER 16.833 342-508
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.890 1395-1437
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 255-264
IPR002867 Zinc finger, C6HC-type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01485 IBR 4.3e-06 1476-1527
1529-1589
HMMSmart SM00647 In 0.031 1463-1527
1528-1592
IPR007087 Zinc finger, C2H2
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 1579-1600
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 3.9e-14 529-624
HMMSmart SM00847 Helicase 9.7e-11 528-624
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 5.1e-07 150-299
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 8.3e-09 690-766
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.1e-24 137-322
ProfileScan PS51192 HELICASE_ATP_BIND_1 15.904 149-313
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 1411-1420
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.6e-64 141-666
no_ID  
Coil coil coiled-coil NA 70-91
Gene3D G3DSA:3.40.50.300 no description 6.7e-16 139-297
344-485
HMMPanther PTHR18934 ATP-DEPENDENT 4.7e-227 31-766
Seg seg seg NA 3-15
17-41
127-141
267-280
330-344
660-673
superfamily SSF54791 Eukaryotic 1.4e-05 1221-1310
superfamily SSF57850 RING/U-box 4.4e-08 1388-1487
1546-1602
1463-1532
Wolf-PSORT
Lj0g3v0271549.1	nucl 10, mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0271549.1