Miyakogusa Predicted Gene
- Lj0g3v0270749.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IX40_MEDTR |
717 |
76.0 |
83.0 |
(tr|G7IX40) Pectinesterase OS=Medicago truncatula GN=MTR_3g033690 PE=3 SV=1 |
| TAIR_pep |
AT5G51490.1 |
527 |
55.0 |
72.6 |
| Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:20913680-20915606 REVERSE LENGTH=536 |
| Medicago |
Medtr3g033690.1 |
717 |
76.0 |
83.0 |
| pectinesterase/pectinesterase inhibitor | HC | chr3:10818606-10821427 | 20130731 |
| Soybean |
Glyma04g13600.1 |
698 |
74.3 |
83.3 |
|
| LJGI |
gnl|LJGI|AI967495 |
682 |
99.7 |
99.7 |
similar to UniRef100_A7Q4Y4 Cluster: Chromosome undetermined scaffold_51, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_51, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0270749.1 |
length: 484 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
1.9e-120 |
216-483 |
| IPR006501 |
Pectinesterase inhibitor |
| Molecular Function |
GO:0004857 |
enzyme inhibitor activity |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Gene3D |
G3DSA:1.20.140.40 |
no description |
7.5e-17 |
26-177 |
| HMMPfam |
PF04043 |
PMEI |
1.6e-16 |
25-173 |
| HMMSmart |
SM00856 |
Plant |
2.1e-15 |
24-173 |
| HMMTigr |
TIGR01614 |
PME_inhib: |
3.4e-17 |
4-175 |
| superfamily |
SSF101148 |
Plant |
2.3e-18 |
26-180 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
1.6e-88 |
209-484 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
1.5e-100 |
212-483 |
| no_ID |
|
| HMMPanther |
PTHR31707 |
FAMILY |
2.2e-191 |
22-484 |
| HMMPanther |
PTHR31707:SF0 |
SUBFAMILY |
2.2e-191 |
22-484 |
| Seg |
seg |
seg |
NA |
4-27 |
- Wolf-PSORT
Lj0g3v0270749.1 chlo 5, nucl 3, E.R. 2, nucl_plas 2, plas 1, extr 1, vacu 1, pero 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0270749.1 |
|