Miyakogusa Predicted Gene
- Lj0g3v0269949.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LLZ6_SOYBN |
444 |
69.7 |
80.8 |
(tr|K7LLZ6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G62310.1 |
276 |
50.9 |
62.3 |
| Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr1:23036039-23039301 REVERSE LENGTH=883 |
| Medicago |
Medtr1g069565.1 |
424 |
68.4 |
79.7 |
| transcription factor jumonji (JmjC) domain protein | HC | chr1:30209280-30198834 | 20130731 |
| Soybean |
Glyma20g23860.1 |
366 |
64.2 |
74.0 |
|
| LJGI |
gnl|LJGI|TC80509 |
533 |
89.3 |
89.3 |
similar to UniRef100_A7Q7J4 Cluster: Chromosome undetermined scaffold_60, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_60, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0269949.1 |
length: 311 aa. |
| IPR003347 |
JmjC domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF02373 |
JmjC |
1.1e-14 |
149-252 |
| HMMSmart |
SM00558 |
A |
8.4e-44 |
1-269 |
| ProfileScan |
PS51184 |
JMJC |
22.588 |
1-269 |
| no_ID |
|
| HMMPanther |
PTHR12549 |
JMJC |
5.9e-135 |
1-308 |
| HMMPanther |
PTHR12549:SF1 |
TRANSCRIPTION |
5.9e-135 |
1-308 |
| superfamily |
SSF51197 |
Clavaminate |
5.6e-25 |
15-307 |
- Wolf-PSORT
Lj0g3v0269949.1 nucl 8, cyto 2, extr 2, chlo 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0269949.1 |
|