Miyakogusa Predicted Gene
- Lj0g3v0269099.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MK36_SOYBN |
119 |
82.2 |
84.9 |
(tr|K7MK36) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G55600.1 |
104 |
65.3 |
80.0 |
| Symbols: | Membrane fusion protein Use1 | chr3:20620682-20622341 FORWARD LENGTH=240 |
| Medicago |
Medtr8g027710.2 |
117 |
80.8 |
83.6 |
| membrane fusion protein Use1 | HC | chr8:10013931-10008042 | 20130731 |
| Soybean |
Glyma17g06420.1 |
119 |
82.2 |
84.9 |
|
| LJGI |
gnl|LJGI|TC71020 |
440 |
99.6 |
99.6 |
similar to UniRef100_A7Q6A8 Cluster: Chromosome chr11 scaffold_56, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_56, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0269099.1 |
length: 79 aa. |
| IPR019150 |
Vesicle transport protein, Use1 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF09753 |
Use1 |
5.4e-10 |
4-73 |
| no_ID |
|
| HMMPanther |
PTHR31863 |
FAMILY |
1.2e-23 |
1-72 |
| HMMPanther |
PTHR31863:SF0 |
SUBFAMILY |
1.2e-23 |
1-72 |
| Seg |
seg |
seg |
NA |
15-24 |
- Wolf-PSORT
Lj0g3v0269099.1 cyto 7, cysk_nucl 2.5, nucl 2, chlo 1, mito 1, plas 1, pero 1, cysk 1, chlo_mito 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0269099.1 |
Not targeted |
-41.512 |
-0.093 |
-7.164 |
56.84% |
-34.254
|