Miyakogusa Predicted Gene

Lj0g3v0268209.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LM96_SOYBN 535 76.7 86.3 (tr|I1LM96) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G03820.1 435 61.4 76.7 | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516
Medicago Medtr3g064880.1 486 69.9 81.9 | nonsense-mediated mRNA decay NMD3 family protein | HC | chr3:29269880-29272912 | 20130731
Soybean Glyma11g33380.1 535 76.7 86.3  
LJGI gnl|LJGI|TC76638 1090 89.4 89.4 similar to UniRef100_A7PYY1 Cluster: Chromosome chr4 scaffold_39, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_39, whole genome shotgun sequence - Vitis vinifera (Grape), partial (64%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0268209.1 length: 374 aa.
IPR007064 NMD3
method AccNumber shortName E-value location
HMMPfam PF04981 NMD3 1.2e-27 1-109
no_ID  
HMMPanther PTHR12746 NONSENSE-MEDIATED 7.5e-149 1-374
HMMPanther PTHR12746:SF0 SUBFAMILY 7.5e-149 1-374
Seg seg seg NA 176-194
342-370
Wolf-PSORT
Lj0g3v0268209.1	cyto 9, nucl 2, chlo 1, mito 1, pero 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0268209.1