Miyakogusa Predicted Gene

Lj0g3v0268139.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MQT3_SOYBN 1499 73.0 83.0 (tr|K7MQT3) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
TAIR_pep AT5G15280.1 806 42.8 64.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4962293-4965976 FORWARD LENGTH=1227
Medicago Medtr3g053000.1 1537 73.8 86.3 | PPR containing plant-like protein | HC | chr3:21005019-21000734 | 20130731
Soybean Glyma18g10450.1 1413 75.4 85.5  
LJGI gnl|LJGI|GO036089 1304 99.6 99.6 weakly similar to UniRef100_A7PMY6 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0268139.1 length: 1082 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.36 155-184
365-393
607-635
747-774
819-845
1028-1053
1062-1081
HMMPfam PF13041 PPR_2 9.3e-15 397-446
HMMPfam PF13812 PPR_3 0.31 921-950
HMMTigr TIGR00756 PPR: 0.001 400-434
436-465
747-775
817-848
1027-1058
ProfileScan PS51375 PPR 7.914 152-186
188-222
223-257
296-326
261-295
328-362
398-432
363-397
433-467
533-567
604-638
568-603
639-673
674-704
743-777
813-847
848-882
918-952
953-987
1023-1057
988-1022
1058-1082
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00044 935-936
no_ID  
HMMPanther PTHR24015 FAMILY 2.6e-90 15-1082
HMMPanther PTHR24015:SF0 SUBFAMILY 2.6e-90 15-1082
Seg seg seg NA 8-24
26-53
Wolf-PSORT
Lj0g3v0268139.1	chlo 8, nucl 2, extr 2, mito 1.5, cyto_mito 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0268139.1