Miyakogusa Predicted Gene

Lj0g3v0263569.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SE17_MEDTR 424 85.3 89.7 (tr|I3SE17) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
TAIR_pep AT4G38210.1 306 61.1 75.2 | Symbols: ATEXPA20, EXP20, ATEXP20, ATHEXP ALPHA 1.23, EXPA20 | expansin A20 | chr4:17922975-17923821 REVERSE LENGTH=256
Medicago Medtr0040s0140.1 424 85.3 89.7 | expansin A20 | HC | scaffold0040:56287-58582 | 20130731
Soybean Glyma06g44940.1 421 83.0 88.9  
LJGI gnl|LJGI|TC57763 1522 100.0 100.0 similar to UniRef100_A7P8T2 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0263569.2 length: 254 aa.
IPR002963 Expansin
method AccNumber shortName E-value location
Biological Process GO:0009664 plant-type cell wall organization    
FPrintScan PR01226 EXPANSIN 9.6e-52 57-71
84-95
98-108
117-134
134-147
158-170
170-191
205-226
234-250
IPR007112 Expansin/pollen allergen, DPBB domain
HMMSmart SM00837 Rare 4.1e-42 62-149
ProfileScan PS50842 EXPANSIN_EG45 27.740 45-159
IPR007117 Expansin, cellulose-binding-like domain
Gene3D G3DSA:2.60.40.760 no description 5.6e-30 154-250
HMMPfam PF01357 Pollen_allerg_1 7e-23 161-237
ProfileScan PS50843 EXPANSIN_CBD 20.705 169-248
superfamily SSF49590 PHL 6.3e-31 156-248
IPR007118 Expansin/Lol pI
Cellular Component GO:0005576 extracellular region    
FPrintScan PR01225 EXPANSNFAMLY 3.2e-35 26-41
44-62
66-84
142-158
196-210
234-248
IPR009009 Barwin-related endoglucanase
HMMPfam PF03330 DPBB_1 1.3e-20 63-149
superfamily SSF50685 Barwin-like 1.4e-34 9-159
IPR014733 Barwin-like endoglucanase
Gene3D G3DSA:2.40.40.10 no description 7.2e-41 14-153
no_ID  
HMMPanther PTHR31867 FAMILY 1.3e-144 8-253
HMMPanther PTHR31867:SF0 SUBFAMILY 1.3e-144 8-253
Seg seg seg NA 4-19
178-191
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 21
Wolf-PSORT
Lj0g3v0263569.2	extr 8, chlo 2, nucl 1, cyto 1, vacu 1, E.R. 1, cyto_nucl 1, chlo_mito 1, E.R._vacu 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0263569.2