Miyakogusa Predicted Gene
- Lj0g3v0261819.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LLA9_SOYBN |
543 |
89.1 |
93.5 |
(tr|I1LLA9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G63780.1 |
461 |
73.8 |
85.7 |
| Symbols: IMP4 | Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294 |
| Medicago |
Medtr3g019370.1 |
520 |
85.6 |
91.4 |
| U3 small nucleolar IMP4-like ribonucleoprotein | HC | chr3:5435201-5441777 | 20130731 |
| Soybean |
Glyma11g21290.1 |
543 |
89.1 |
93.5 |
|
| LJGI |
gnl|LJGI|TC65362 |
1748 |
100.0 |
100.0 |
similar to UniRef100_A9TVY3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (96%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0261819.1 |
length: 293 aa. |
| IPR004154 |
Anticodon-binding |
| method |
AccNumber |
shortName |
E-value |
location |
| superfamily |
SSF52954 |
Class |
2.7e-62 |
82-265 |
| IPR007109 |
Brix domain |
| Gene3D |
G3DSA:3.40.50.10480 |
no description |
3.8e-54 |
84-263 |
| HMMPfam |
PF04427 |
Brix |
6.1e-48 |
88-262 |
| HMMSmart |
SM00879 |
no description |
8.8e-62 |
86-262 |
| ProfileScan |
PS50833 |
BRIX |
44.037 |
83-268 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
18-39 |
| HMMPanther |
PTHR22734 |
U3 |
4.2e-150 |
1-291 |
| HMMPanther |
PTHR22734:SF0 |
SUBFAMILY |
4.2e-150 |
1-291 |
| Seg |
seg |
seg |
NA |
45-56 |
- Wolf-PSORT
Lj0g3v0261819.1 cyto 5, nucl 4, mito 3, chlo 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0261819.1 |
|