Miyakogusa Predicted Gene
- Lj0g3v0260519.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JTW9_MEDTR |
335 |
76.9 |
82.8 |
(tr|G7JTW9) Protein Mpv17 OS=Medicago truncatula GN=MTR_4g078760 PE=4 SV=1 |
| TAIR_pep |
AT2G42770.1 |
284 |
74.5 |
84.8 |
| Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr2:17798635-17799927 REVERSE LENGTH=232 |
| Medicago |
Medtr4g078760.1 |
335 |
76.9 |
82.8 |
| peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | HC | chr4:30435130-30437233 | 20130731 |
| Soybean |
Glyma06g44390.1 |
330 |
81.4 |
87.7 |
|
| LJGI |
gnl|LJGI|TC68385 |
1291 |
99.5 |
99.5 |
similar to UniRef100_Q9SJH9 Cluster: Expressed protein; n=1; Arabidopsis thaliana|Rep: Expressed protein - Arabidopsis thaliana (Mouse-ear cress), partial (59%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0260519.1 |
length: 219 aa. |
| IPR007248 |
Mpv17/PMP22 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR11266 |
PEROXISOMAL |
3.4e-51 |
46-214 |
| HMMPfam |
PF04117 |
Mpv17_PMP22 |
3.7e-17 |
155-218 |
| no_ID |
|
| HMMPanther |
PTHR11266:SF4 |
SUBFAMILY |
3.4e-51 |
46-214 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
131 |
153 |
| 178 |
200 |
- Wolf-PSORT
Lj0g3v0260519.1 chlo 8, nucl 4, mito 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0260519.1 |
|