Miyakogusa Predicted Gene
- Lj0g3v0260289.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1NEJ3_SOYBN |
216 |
89.4 |
95.6 |
(tr|I1NEJ3) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT2G33205.1 |
160 |
72.2 |
89.7 |
| Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr2:14070987-14073211 REVERSE LENGTH=422 |
| Medicago |
Medtr1g046480.1 |
205 |
85.0 |
94.7 |
| TMS membrane protein/tumor differentially protein | HC | chr1:17517299-17521651 | 20130731 |
| Soybean |
Glyma20g19930.1 |
215 |
89.4 |
95.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0260289.1 |
length: 113 aa. |
| IPR005016 |
TMS membrane protein/tumour differentially expressed protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPanther |
PTHR10383 |
SERINE |
1.3e-43 |
1-99 |
| HMMPfam |
PF03348 |
Serinc |
6.5e-18 |
20-95 |
| no_ID |
|
| HMMPanther |
PTHR10383:SF2 |
UNCHARACTERIZED |
1.3e-43 |
1-99 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
31 |
53 |
| 75 |
96 |
- Wolf-PSORT
Lj0g3v0260289.1 chlo 3, cyto 3, plas 3, cyto_plas 3, nucl 2, extr 2, E.R._plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0260289.1 |
|