Miyakogusa Predicted Gene

Lj0g3v0259479.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7LES7_MEDTR 934 78.9 85.8 (tr|G7LES7) Tubby-like F-box protein OS=Medicago truncatula GN=MTR_8g077680 PE=4 SV=1
TAIR_pep AT4G36630.1 766 63.8 78.2 | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000
Medicago Medtr8g077680.1 938 78.9 85.8 | vam6/Vps39-like protein | HC | chr8:33049752-33042308 | 20130731
Soybean Glyma01g38240.1 909 76.1 85.1  
LJGI gnl|LJGI|TC67218 1378 99.9 99.9 similar to UniRef100_A7PUV1 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0259479.1 length: 636 aa.
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
HMMPfam PF00637 Clathrin 2e-06 471-590
IPR001180 Citron-like
Molecular Function GO:0005083 small GTPase regulator activity    
HMMPfam PF00780 CNH 4.6e-17 3-118
ProfileScan PS50219 CNH 12.201 1-125
IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
HMMPfam PF10366 Vps39_1 3.1e-24 345-450
no_ID  
HMMPanther PTHR12894 CNH 0 1-588
HMMPanther PTHR12894:SF5 TGF 0 1-588
Seg seg seg NA 345-361
441-452
Putative transmembrane regions
  From To
TM segments
SOSUI		 33 55
589 611
Wolf-PSORT
Lj0g3v0259479.1	nucl 5, cyto 4, chlo 2, cyto_pero 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0259479.1