Miyakogusa Predicted Gene

Lj0g3v0258839.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KC67_SOYBN 712 91.1 93.7 (tr|K7KC67) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G60990.1 616 76.4 86.4 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:24546601-24549148 REVERSE LENGTH=456
Medicago Medtr6g082080.1 703 89.5 92.9 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr6:30641167-30650711 | 20130731
Soybean Glyma03g01710.1 712 91.1 93.7  
LJGI gnl|LJGI|TC71753 1174 99.8 99.8 similar to UniRef100_A7R2P2 Cluster: Chromosome undetermined scaffold_438, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_438, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0258839.1 length: 384 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 161-169
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 9.4e-28 272-347
HMMSmart SM00490 helicase 4.7e-33 266-347
ProfileScan PS51194 HELICASE_CTER 21.543 242-384
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.9e-48 36-204
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.8e-59 30-230
ProfileScan PS51192 HELICASE_ATP_BIND_1 33.364 42-215
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 11.377 11-39
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.8e-73 80-370
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.9e-58 3-212
213-380
HMMPanther PTHR24031 FAMILY 1.6e-262 1-381
HMMPanther PTHR24031:SF78 SUBFAMILY 1.6e-262 1-381
Seg seg seg NA 267-277
Wolf-PSORT
Lj0g3v0258839.1	cyto 8, nucl 4, cyto_E.R. 4, cyto_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0258839.1