Miyakogusa Predicted Gene

Lj0g3v0258519.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KS10_MEDTR 1196 65.9 77.9 (tr|G7KS10) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g017530 PE=4 SV=1
TAIR_pep AT2G31400.1 927 56.7 74.2 | Symbols: GUN1 | genomes uncoupled 1 | chr2:13387201-13390550 REVERSE LENGTH=918
Medicago Medtr7g017530.1 1196 65.9 77.9 | PPR containing plant protein | HC | chr7:5596340-5592826 | 20130731
Soybean Glyma08g28160.1 1070 60.8 73.5  
LJGI gnl|LJGI|TC78780 1756 100.0 100.0 similar to UniRef100_A7Q0P9 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0258519.1 length: 888 aa.
IPR002625 Smr protein/MutS2 C-terminal
method AccNumber shortName E-value location
HMMSmart SM00463 Small 2.7e-17 766-858
ProfileScan PS50828 SMR 18.820 769-858
IPR002885 Pentatricopeptide repeat
HMMPfam PF01535 PPR 6.2e-07 214-234
317-347
422-452
HMMPfam PF13041 PPR_2 1.2e-13 244-289
350-398
455-502
525-571
HMMPfam PF13812 PPR_3 0.0082 660-687
HMMTigr TIGR00756 PPR: 4e-07 246-279
281-315
352-382
387-414
422-455
457-491
493-525
529-561
ProfileScan PS51375 PPR 8.539 244-278
209-243
279-314
315-349
385-419
350-384
420-454
455-489
490-524
525-559
560-594
659-693
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7e-09 387-519
no_ID  
HMMPanther PTHR24015 FAMILY 7.2e-122 79-687
Seg seg seg NA 21-36
61-87
Wolf-PSORT
Lj0g3v0258519.1	chlo 7, mito 7, chlo_mito 7
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0258519.1