Miyakogusa Predicted Gene

Lj0g3v0258499.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MV40_SOYBN 817 60.5 70.4 (tr|K7MV40) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G29290.1 451 50.6 68.0 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:11238421-11240125 FORWARD LENGTH=540
Medicago Medtr7g017610.1 736 57.0 68.5 | PPR containing plant-like protein | HC | chr7:5623801-5620341 | 20130731
Soybean Glyma18g51200.1 655 75.9 86.4  
LJGI gnl|LJGI|AV779144 383 98.1 98.1 weakly similar to UniRef100_A7PN27 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0258499.1 length: 697 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.021 312-341
384-413
456-480
560-588
660-689
HMMPfam PF13041 PPR_2 2.2e-12 485-532
HMMPfam PF13812 PPR_3 0.0088 418-450
HMMTigr TIGR00756 PPR: 3.8e-05 312-341
383-413
419-452
455-486
488-522
523-551
594-627
660-693
ProfileScan PS51375 PPR 11.005 274-308
309-343
381-415
416-450
451-485
486-520
521-551
557-591
592-626
657-691
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.1e-12 417-686
no_ID  
HMMPanther PTHR24015 FAMILY 2.2e-81 264-695
Seg seg seg NA 106-120
217-229
superfamily SSF48452 TPR-like 0.01 484-581
381-480
Wolf-PSORT
Lj0g3v0258499.1	chlo 10, nucl 1, cyto 1, vacu 1, E.R. 1, cyto_nucl 1, E.R._vacu 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0258499.1