Miyakogusa Predicted Gene

Lj0g3v0258489.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KZW9_SOYBN 240 63.2 77.4 (tr|K7KZW9) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G30240.1 156 45.7 63.3 | Symbols: | FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=825

Medicago Medtr8g028030.1 229 61.6 75.8 | rRNA processing/ribosome biogenesis protein | HC | chr8:10367089-10377430 | 20130731

Soybean Glyma16g03070.1 202 56.8 70.5

LJGI gnl|LJGI|TC57812 311 83.6 83.6 weakly similar to UniRef100_A8MQA6 Cluster: Uncharacterized protein At1g30240.1; n=1; Arabidopsis thaliana|Rep: Uncharacterized protein At1g30240.1 - Arabidopsis thaliana (Mouse-ear cress), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0258489.1 length: 180 aa.

no_ID

method AccNumber shortName E-value location

HMMPfam PF08167 RIX1 1.9e-17 38-170

Wolf-PSORT

Lj0g3v0258489.1 cyto 8, chlo 4, cyto_pero 4, cyto_E.R. 4, cyto_plas 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0258489.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KZW9_SOYBN	240	63.2	77.4	(tr\|K7KZW9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G30240.1	156	45.7	63.3	\| Symbols: \| FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). \| chr1:10641241-10645838 REVERSE LENGTH=825
Medicago	Medtr8g028030.1	229	61.6	75.8	\| rRNA processing/ribosome biogenesis protein \| HC \| chr8:10367089-10377430 \| 20130731
Soybean	Glyma16g03070.1	202	56.8	70.5
LJGI	gnl\|LJGI\|TC57812	311	83.6	83.6	weakly similar to UniRef100_A8MQA6 Cluster: Uncharacterized protein At1g30240.1; n=1; Arabidopsis thaliana\|Rep: Uncharacterized protein At1g30240.1 - Arabidopsis thaliana (Mouse-ear cress), partial (11%)

no_ID
Lj0g3v0258489.1				length: 180 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF08167	RIX1	1.9e-17	38-170