Miyakogusa Predicted Gene

Lj0g3v0258189.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LGL7_SOYBN 996 78.6 87.6 (tr|K7LGL7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G35030.1 709 59.7 77.8 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:14761080-14762963 REVERSE LENGTH=627
Medicago Medtr1g038860.1 958 76.4 87.0 | PPR containing plant-like protein | LC | chr1:14313044-14316621 | 20130731
Soybean Glyma09g41980.1 978 81.8 90.8  
LJGI gnl|LJGI|AU089102 567 91.3 91.3 weakly similar to UniRef100_A7QJL0 Cluster: Chromosome chr8 scaffold_106, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_106, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0258189.1 length: 625 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.011 79-100
109-139
141-170
233-262
368-390
472-492
537-566
HMMPfam PF12854 PPR_1 1.4e-07 49-72
199-228
HMMPfam PF13041 PPR_2 4.4e-10 292-341
397-444
HMMTigr TIGR00756 PPR: 1.9e-06 48-76
109-139
141-171
203-232
233-263
265-292
295-323
399-432
ProfileScan PS51375 PPR 9.745 44-78
138-172
107-137
231-265
200-230
173-199
293-328
266-292
364-395
329-363
397-431
432-462
468-498
534-568
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.8e-16 56-248
527-555
no_ID  
HMMPanther PTHR24015 FAMILY 9.4e-249 52-624
HMMPanther PTHR24015:SF83 SUBFAMILY 9.4e-249 52-624
Seg seg seg NA 611-622
superfamily SSF48452 TPR-like 0.00024 98-203
360-554
196-320
Wolf-PSORT
Lj0g3v0258189.1	chlo 9.5, chlo_mito 6.5, mito 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0258189.1