Miyakogusa Predicted Gene

Lj0g3v0257609.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N9X6_SOYBN 269 76.7 83.1 (tr|I1N9X6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G43920.1 213 60.3 73.0 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:17673397-17675630 FORWARD LENGTH=523
Medicago Medtr1g069345.1 277 79.1 82.6 | transducin/WD40 repeat protein | HC | chr1:29955415-29960832 | 20130731
Soybean Glyma19g35380.1 269 76.7 83.1  
LJGI gnl|LJGI|TC79623 555 99.6 99.6 similar to UniRef100_A7Q1I0 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0257609.1 length: 165 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.4e-05 34-71
75-106
HMMSmart SM00320 WD40 4.8 32-71
74-115
117-157
ProfileScan PS50082 WD_REPEATS_2 14.352 39-80
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.2e-28 29-161
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.505 39-165
superfamily SSF50978 WD40 8.2e-26 31-160
no_ID  
HMMPanther PTHR22838 WD 9.8e-25 22-155
HMMPanther PTHR22838:SF0 SUBFAMILY 9.8e-25 22-155
Wolf-PSORT
Lj0g3v0257609.1	cyto 6, nucl 5, chlo 1, extr 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0257609.1