Miyakogusa Predicted Gene

Lj0g3v0257549.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7M923_SOYBN 765 73.9 82.0 (tr|K7M923) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G48120.1 423 42.3 63.5 | Symbols: | ARM repeat superfamily protein | chr5:19508210-19514774 REVERSE LENGTH=1134

Medicago Medtr2g100870.1 739 71.7 79.8 | MMS19 nucleotide excision repair-like protein | HC | chr2:43381311-43393499 | 20130731

Soybean Glyma13g43100.1 394 73.3 81.3

LJGI gnl|LJGI|DC593658 605 98.8 98.8 weakly similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0257549.2 length: 513 aa.

IPR011989 Armadillo-like helical

method AccNumber shortName E-value location

Gene3D G3DSA:1.25.10.10 no description 8.8e-11 19-417

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 4.1e-14 17-460

IPR024687 Transcription protein MMS19, N-terminal domain

HMMPfam PF12460 MMS19_N 6.9e-13 11-74

no_ID

HMMPanther PTHR12891 DNA 9.4e-103 29-472

Seg seg seg NA 146-157
262-273

Wolf-PSORT

Lj0g3v0257549.2 nucl 8, cyto 3, chlo 1, vacu 1, golg 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0257549.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7M923_SOYBN	765	73.9	82.0	(tr\|K7M923) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G48120.1	423	42.3	63.5	\| Symbols: \| ARM repeat superfamily protein \| chr5:19508210-19514774 REVERSE LENGTH=1134
Medicago	Medtr2g100870.1	739	71.7	79.8	\| MMS19 nucleotide excision repair-like protein \| HC \| chr2:43381311-43393499 \| 20130731
Soybean	Glyma13g43100.1	394	73.3	81.3
LJGI	gnl\|LJGI\|DC593658	605	98.8	98.8	weakly similar to UniRef100_A7P731 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

IPR011989	Armadillo-like helical
Lj0g3v0257549.2				length: 513 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:1.25.10.10	no description	8.8e-11	19-417
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	4.1e-14	17-460
IPR024687	Transcription protein MMS19, N-terminal domain
HMMPfam	PF12460	MMS19_N	6.9e-13	11-74
no_ID
HMMPanther	PTHR12891	DNA	9.4e-103	29-472
Seg	seg	seg	NA	146-157 262-273